University autonomy and government intervention are a pair of basic contradictions in the external relationship of higher education. Strategies of the Coordinated Development of University Autonomy and Government Intervention as follow: balance autonomy and intervention under the premise of public justice; establish a multi-centric co-governance with mutual restriction to realize good governance; modernize the governance capacity of universities with the rule of law as the core; build trust mechanism based on social choice by combining self-discipline with heteronomy. Only in this way, can we coordinate the development of university autonomy and government intervention.