Enterprise innovation is the core driving force of national development. As the core of the modern enterprise system, corporate governance has a significant impact on enterprise innovation. Through particularizing the issue of corporate governance and then analyzing thoroughly about the interaction between the structure of corporate governance and the level of enterprise innovation by means of the method of empirical research , the article aims to ascertain the critical factors in the mode of corporate governance which have an impact on the level of enterprise innovation, thereby providing the relative references for the reform of corporate governance in China and promotion of enterprise innovation.